Tables
The constants, in one place
Every value below is computed from the first table. The primers quote the same constants, so the tables and the text cannot disagree. Monoisotopic masses are exact to five decimals; average masses depend on the atomic weights chosen and can differ from other sources in the third decimal place.
Atomic masses
| Element | Symbol | Monoisotopic (Da) | Standard atomic weight |
|---|---|---|---|
| Carbon | C | 12.00000000 | 12.011 |
| Hydrogen | H | 1.00782503 | 1.008 |
| Nitrogen | N | 14.00307401 | 14.007 |
| Oxygen | O | 15.99491462 | 15.999 |
| Sulfur | S | 31.97207117 | 32.060 |
Source: IUPAC Commission on Isotopic Abundances and Atomic Weights, standard atomic weights. Proton mass, for [M+H]+: 1.00727647 Da.
SI prefixes
| Prefix | Symbol | Factor |
|---|---|---|
| kilo | k | ×1,000 |
| (none) | – | ×1 |
| milli | m | ×10^-3 |
| micro | µ | ×10^-6 |
| nano | n | ×10^-9 |
| pico | p | ×10^-12 |
Amino acid residues
A residue is the amino acid minus one water. The mass of a linear chain is the sum of its residues plus one water, as explained in The arithmetic of chains.
| Residue | Codes | Residue formula | Monoisotopic (Da) | Average (Da) | Free amino acid, mono (Da) |
|---|---|---|---|---|---|
| Glycine | Gly · G | C2H3NO | 57.02146 | 57.052 | 75.03203 |
| Alanine | Ala · A | C3H5NO | 71.03711 | 71.079 | 89.04768 |
| Serine | Ser · S | C3H5NO2 | 87.03203 | 87.078 | 105.04259 |
| Proline | Pro · P | C5H7NO | 97.05276 | 97.117 | 115.06333 |
| Valine | Val · V | C5H9NO | 99.06841 | 99.133 | 117.07898 |
| Threonine | Thr · T | C4H7NO2 | 101.04768 | 101.105 | 119.05824 |
| Cysteine | Cys · C | C3H5NOS | 103.00918 | 103.139 | 121.01975 |
| Leucine | Leu · L | C6H11NO | 113.08406 | 113.160 | 131.09463 |
| Isoleucine | Ile · I | C6H11NO | 113.08406 | 113.160 | 131.09463 |
| Asparagine | Asn · N | C4H6N2O2 | 114.04293 | 114.104 | 132.05349 |
| Aspartic acid | Asp · D | C4H5NO3 | 115.02694 | 115.088 | 133.03751 |
| Glutamine | Gln · Q | C5H8N2O2 | 128.05858 | 128.131 | 146.06914 |
| Lysine | Lys · K | C6H12N2O | 128.09496 | 128.175 | 146.10553 |
| Glutamic acid | Glu · E | C5H7NO3 | 129.04259 | 129.115 | 147.05316 |
| Methionine | Met · M | C5H9NOS | 131.04049 | 131.193 | 149.05105 |
| Histidine | His · H | C6H7N3O | 137.05891 | 137.142 | 155.06948 |
| Phenylalanine | Phe · F | C9H9NO | 147.06841 | 147.177 | 165.07898 |
| Arginine | Arg · R | C6H12N4O | 156.10111 | 156.189 | 174.11168 |
| Tyrosine | Tyr · Y | C9H9NO2 | 163.06333 | 163.176 | 181.07389 |
| Tryptophan | Trp · W | C11H10N2O | 186.07931 | 186.214 | 204.08988 |
Small molecules
| Compound | Formula | Monoisotopic (Da) | Average (Da) |
|---|---|---|---|
| Water | H2O | 18.01056 | 18.015 |
| Glycine | C2H5NO2 | 75.03203 | 75.067 |
| Alanine | C3H7NO2 | 89.04768 | 89.094 |
| Leucine / Isoleucine | C6H13NO2 | 131.09463 | 131.175 |
| Glucose (anhydrous) | C6H12O6 | 180.06339 | 180.156 |
| Glucose monohydrate | C6H14O7 | 198.07395 | 198.171 |
| Caffeine | C8H10N4O2 | 194.08038 | 194.194 |