Bench Primer

Tables

The constants, in one place

Every value below is computed from the first table. The primers quote the same constants, so the tables and the text cannot disagree. Monoisotopic masses are exact to five decimals; average masses depend on the atomic weights chosen and can differ from other sources in the third decimal place.

Atomic masses

ElementSymbolMonoisotopic (Da)Standard atomic weight
CarbonC12.0000000012.011
HydrogenH1.007825031.008
NitrogenN14.0030740114.007
OxygenO15.9949146215.999
SulfurS31.9720711732.060
Monoisotopic: exact mass of the most abundant isotope (12C, 1H, 14N, 16O, 32S). Standard atomic weight: IUPAC abridged value, 2021.

Source: IUPAC Commission on Isotopic Abundances and Atomic Weights, standard atomic weights. Proton mass, for [M+H]+: 1.00727647 Da.

SI prefixes

PrefixSymbolFactor
kilok×1,000
(none)–×1
millim×10^-3
microµ×10^-6
nanon×10^-9
picop×10^-12
Each step is a factor of a thousand. See the primer on changing units.

Amino acid residues

A residue is the amino acid minus one water. The mass of a linear chain is the sum of its residues plus one water, as explained in The arithmetic of chains.

ResidueCodesResidue formulaMonoisotopic (Da)Average (Da)Free amino acid, mono (Da)
GlycineGly · GC2H3NO57.0214657.05275.03203
AlanineAla · AC3H5NO71.0371171.07989.04768
SerineSer · SC3H5NO287.0320387.078105.04259
ProlinePro · PC5H7NO97.0527697.117115.06333
ValineVal · VC5H9NO99.0684199.133117.07898
ThreonineThr · TC4H7NO2101.04768101.105119.05824
CysteineCys · CC3H5NOS103.00918103.139121.01975
LeucineLeu · LC6H11NO113.08406113.160131.09463
IsoleucineIle · IC6H11NO113.08406113.160131.09463
AsparagineAsn · NC4H6N2O2114.04293114.104132.05349
Aspartic acidAsp · DC4H5NO3115.02694115.088133.03751
GlutamineGln · QC5H8N2O2128.05858128.131146.06914
LysineLys · KC6H12N2O128.09496128.175146.10553
Glutamic acidGlu · EC5H7NO3129.04259129.115147.05316
MethionineMet · MC5H9NOS131.04049131.193149.05105
HistidineHis · HC6H7N3O137.05891137.142155.06948
PhenylalaninePhe · FC9H9NO147.06841147.177165.07898
ArginineArg · RC6H12N4O156.10111156.189174.11168
TyrosineTyr · YC9H9NO2163.06333163.176181.07389
TryptophanTrp · WC11H10N2O186.07931186.214204.08988
Leucine and isoleucine are constitutional isomers and share every value in this table.

Small molecules

CompoundFormulaMonoisotopic (Da)Average (Da)
WaterH2O18.0105618.015
GlycineC2H5NO275.0320375.067
AlanineC3H7NO289.0476889.094
Leucine / IsoleucineC6H13NO2131.09463131.175
Glucose (anhydrous)C6H12O6180.06339180.156
Glucose monohydrateC6H14O7198.07395198.171
CaffeineC8H10N4O2194.08038194.194
The monohydrate row is the anhydrous row plus one water: the molar mass to use when that is what is in the bottle.